Data

Here, you can find the datasets generated in our studies. They are accessible via their bioproject numbers in the European Nucleotide archive (ENA) or directly through an interactive map where you can choose single isolates with more metadata. We are happy when these datasets are used for comparative studies or similar. Please think about citing the respective publication when using this data.


NTM datasets

Project Species Sample Size Location BioProject Interactive Map & Phylogeny Reference
NTMscope-MAC M. avium complex 610 Germany, Switzerland, France PRJEB70863 Microreact project Wetzstein N, Diricks M, Anton TB, Andres S, Kuhns M, Kohl TA, et al. Clinical and genomic features of Mycobacterium avium complex: a multi-national European study. Genome Med. 2024;16: 86. doi:10.1186/s13073-024-01359-8
MOMA-CF M. abscessus 168 Germany, multicentric PRJEB44160 Microreact project Wetzstein N, Diricks M, Kohl TA, Wichelhaus TA, Andres S, Paulowski L, et al. Molecular Epidemiology of Mycobacterium abscessus Isolates Recovered from German Cystic Fibrosis Patients. Microbiol Spectr. 2022; e0171422. doi:10.1128/SPECTRUM.01714-22
NTMscope-X M. xenopi 76 Germany, monocentric PRJEB95836 Microreact project Diricks M, Marschall L, Biciusca T, Zielbauer A-S, Kevane-Campbell M, Kuhns M, et al. Genomic population structure, antimicrobial susceptibility, and clinical features of Mycobacterium xenopi isolates, Frankfurt, Germany, 1995–2020. Nicol M, editor. J Clin Microbiol. 2026 [cited 10 Feb 2026]. doi:10.1128/jcm.01511-25
NTMscope-S M. simiae 36 Germany, monocentric PRJEB66336 Microreact project Wetzstein N, Diricks M, Andres S, Kuhns M, Marschall L, Biciusca T, et al. Genomic diversity and clinical relevance of Mycobacterium simiae. ERJ Open Res. 2024;10: 00773–02023. doi:10.1183/23120541.00773-2023
NTMscope-Eco Various 27 Germany, environmental, multiple households PRJEB88541 Microreact project Diricks M, Frank D, Friesen I, Niemann S, Wichelhaus TA, Wetzstein N, et al. Global lineages of non-tuberculous mycobacteria in residential water samples from Germany. BMC Microbiol. 2025;25. doi:10.1186/s12866-025-04563-7




MTB datasets

Project Species Sample Size Location BioProject Interactive Map & Phylogeny Reference
FFMTBSEQ M. tuberculosis complex 1035 Frankfurt am Main, Germany PRJEB31139, PRJEB31144, PRJEB36040, PRJEB42771, PRJEB6273, PRJEB9680 Microreact project Rachwal N, Idris R, Dreyer V, Richter E, Wichelhaus TA, Niemann S, Wetzstein N, Götsch U. Pathogen and host determinants of extrapulmonary tuberculosis among 1035 patients in Frankfurt am Main, Germany, 2008-2023. Clin Microbiol Infect. 2024;0: 425–432. doi:10.1016/j.cmi.2024.11.009